Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00749.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1966
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30


Found at i:817 original size:21 final size:22

Alignment explanation


    Indices: 775--819  Score: 56
    Period size: 23  Copynumber: 2.0  Consensus size: 22

        765 AGCTGAAATT

                                   
        775 GAGAGTGCAAGAGCAGCAGTTCA
          1 GAGAGTGCAAGAG-AGCAGTTCA

                   *        *     
        798 GAGAGTGGAAGAG-GCCGTTCA
          1 GAGAGTGCAAGAGAGCAGTTCA

             
        819 G
          1 G

        820 GAGCAAGAAC


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  21    8  0.40
  23   12  0.60

ACGTcount: A:0.31, C:0.16, G:0.40, T:0.13


Consensus pattern (22 bp):   
GAGAGTGCAAGAGAGCAGTTCA
Done.