Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00760.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2003
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27


Found at i:77 original size:2 final size:2

Alignment explanation


    Indices: 70--123  Score: 101
    Period size: 2  Copynumber: 27.5  Consensus size: 2

         60 TTCACCATCC

                                                                          
         70 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT -T
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

                               
        111 CT CT CT CT CT CT C
          1 CT CT CT CT CT CT C

        124 CCTTCCACCA


Statistics
Matches: 51,  Mismatches: 0, Indels: 2
        0.96            0.00        0.04

Matches are distributed among these distances:
   1    1  0.02
   2   50  0.98

ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50


Consensus pattern (2 bp):   
CT

Done.