Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01035.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 893

Length: 1489
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32


Found at i:700 original size:20 final size:20

Alignment explanation


    Indices: 675--715  Score: 55
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        665 TGCATCAGCC

                     **         
        675 ATTAGTCTTTTTAGGCACAA
          1 ATTAGTCTTAGTAGGCACAA

                  *             
        695 ATTAGTGTTAGTAGGCACAA
          1 ATTAGTCTTAGTAGGCACAA

             
        715 A
          1 A

        716 ATTGTTCATG


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  20   18  1.00

ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34


Consensus pattern (20 bp):   
ATTAGTCTTAGTAGGCACAA
Done.