Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00784.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3000
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.32


Found at i:2919 original size:22 final size:22

Alignment explanation


    Indices: 2894--2940  Score: 94
    Period size: 22  Copynumber: 2.1  Consensus size: 22

       2884 TCTTGATATA

                                  
       2894 CTGATAGCATGAGAAACATGTT
          1 CTGATAGCATGAGAAACATGTT

                                  
       2916 CTGATAGCATGAGAAACATGTT
          1 CTGATAGCATGAGAAACATGTT

               
       2938 CTG
          1 CTG

       2941 TAAAAGAACA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   25  1.00

ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28


Consensus pattern (22 bp):   
CTGATAGCATGAGAAACATGTT
Done.