Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00809.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2742
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26


Found at i:2573 original size:14 final size:14

Alignment explanation


    Indices: 2554--2583  Score: 60
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       2544 CTCTACTTTT

                          
       2554 ATAGGAAGAAGGAG
          1 ATAGGAAGAAGGAG

                          
       2568 ATAGGAAGAAGGAG
          1 ATAGGAAGAAGGAG

              
       2582 AT
          1 AT

       2584 CTAGTTAGTT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.50, C:0.00, G:0.40, T:0.10


Consensus pattern (14 bp):   
ATAGGAAGAAGGAG
Done.