Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00814.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 541

Length: 902
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.29


Found at i:122 original size:30 final size:30

Alignment explanation


    Indices: 79--138  Score: 102
    Period size: 30  Copynumber: 2.0  Consensus size: 30

         69 AAAGCAGCGT

                    *                     
         79 CTGTACACGACCATGTCGGCCAAGGACTGC
          1 CTGTACACCACCATGTCGGCCAAGGACTGC

                *                         
        109 CTGTGCACCACCATGTCGGCCAAGGACTGC
          1 CTGTACACCACCATGTCGGCCAAGGACTGC

        139 GGCCACCACG


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  30   28  1.00

ACGTcount: A:0.22, C:0.35, G:0.27, T:0.17


Consensus pattern (30 bp):   
CTGTACACCACCATGTCGGCCAAGGACTGC
Done.