Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01043.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1847
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.32


Found at i:448 original size:15 final size:15

Alignment explanation


    Indices: 428--456  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

        418 ATCAAAGACA

                           
        428 TGGATAATGAAAAAT
          1 TGGATAATGAAAAAT

                          
        443 TGGATAATGAAAAA
          1 TGGATAATGAAAAA

        457 CAAGTCACTC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.55, C:0.00, G:0.21, T:0.24


Consensus pattern (15 bp):   
TGGATAATGAAAAAT
Done.