Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00823.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2331
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.27


Found at i:306 original size:28 final size:28

Alignment explanation


    Indices: 266--319  Score: 108
    Period size: 28  Copynumber: 1.9  Consensus size: 28

        256 CCTATGAGAT

                                        
        266 CCTCTGCCATTATTTGTAGTATATTTTG
          1 CCTCTGCCATTATTTGTAGTATATTTTG

                                      
        294 CCTCTGCCATTATTTGTAGTATATTT
          1 CCTCTGCCATTATTTGTAGTATATTT

        320 GGTTTGCAAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   26  1.00

ACGTcount: A:0.19, C:0.19, G:0.13, T:0.50


Consensus pattern (28 bp):   
CCTCTGCCATTATTTGTAGTATATTTTG
Done.