Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00100.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 553

Length: 923
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27


Found at i:191 original size:57 final size:57

Alignment explanation


    Indices: 103--270  Score: 282
    Period size: 57  Copynumber: 2.9  Consensus size: 57

         93 TTGTTGCTCT

                            *                   *                 *  
        103 CAATCCAATTTGTGGTTGGACAAAACGAGGATGAGGAGGCATCCCCAGAACTCGGAG
          1 CAATCCAATTTGTGGTAGGACAAAACGAGGATGAGGCGGCATCCCCAGAACTCGAAG

                       * *    *                                      
        160 CAATCCAATTTTTTGTAGAACAAAACGAGGATGAGGCGGCATCCCCAGAACTCGAAG
          1 CAATCCAATTTGTGGTAGGACAAAACGAGGATGAGGCGGCATCCCCAGAACTCGAAG

                                                                  
        217 CAATCCAATTTGTGGTAGGACAAAACGAGGATGAGGCGGCATCCCCAGAACTCG
          1 CAATCCAATTTGTGGTAGGACAAAACGAGGATGAGGCGGCATCCCCAGAACTCG

        271 TTATGTCCGA


Statistics
Matches: 102,  Mismatches: 9, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  57  102  1.00

ACGTcount: A:0.33, C:0.23, G:0.27, T:0.18


Consensus pattern (57 bp):   
CAATCCAATTTGTGGTAGGACAAAACGAGGATGAGGCGGCATCCCCAGAACTCGAAG
Done.