Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00843.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3489
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36


Found at i:447 original size:29 final size:29

Alignment explanation


    Indices: 410--467  Score: 116
    Period size: 29  Copynumber: 2.0  Consensus size: 29

        400 GAAATCATGT

                                         
        410 TTTGCAGCTTCTGTAAATTGGGTTTGTTA
          1 TTTGCAGCTTCTGTAAATTGGGTTTGTTA

                                         
        439 TTTGCAGCTTCTGTAAATTGGGTTTGTTA
          1 TTTGCAGCTTCTGTAAATTGGGTTTGTTA

        468 GAACCTTTGA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.17, C:0.10, G:0.24, T:0.48


Consensus pattern (29 bp):   
TTTGCAGCTTCTGTAAATTGGGTTTGTTA
Done.