Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00850.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2177
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31


Found at i:1889 original size:26 final size:27

Alignment explanation


    Indices: 1853--1904  Score: 88
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       1843 AGGTTCCCAC

                                       
       1853 CTGTGGTAATC-TATCTATGATTTCGG
          1 CTGTGGTAATCTTATCTATGATTTCGG

                             *        
       1879 CTGTGGTAATCTTATCTCTGATTTCG
          1 CTGTGGTAATCTTATCTATGATTTCG

       1905 CCTGAATATG


Statistics
Matches: 24,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  26   11  0.46
  27   13  0.54

ACGTcount: A:0.17, C:0.17, G:0.21, T:0.44


Consensus pattern (27 bp):   
CTGTGGTAATCTTATCTATGATTTCGG

Done.