Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01046.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4046
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32


Found at i:422 original size:11 final size:11

Alignment explanation


    Indices: 396--431  Score: 54
    Period size: 11  Copynumber: 3.2  Consensus size: 11

        386 TTTCCAACTC

                     *  
        396 TTAATCTTATTT
          1 TTAAT-TTAATT

                       
        408 TTAATTTAATT
          1 TTAATTTAATT

                       
        419 TTAATTTAATT
          1 TTAATTTAATT

              
        430 TT
          1 TT

        432 CTCCACTGGT


Statistics
Matches: 23,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  11   18  0.78
  12    5  0.22

ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67


Consensus pattern (11 bp):   
TTAATTTAATT
Done.