Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00865.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 696

Length: 1160
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34


Found at i:1106 original size:18 final size:18

Alignment explanation


    Indices: 1079--1118  Score: 55
    Period size: 18  Copynumber: 2.2  Consensus size: 18

       1069 TACATCATTC

                 *             
       1079 TATTTGTTTTATT-TTTCA
          1 TATTTATTTTATTATTT-A

                              
       1097 TATTTATTTTATTATTTA
          1 TATTTATTTTATTATTTA

                
       1115 TATT
          1 TATT

       1119 CCAAGTTTAA


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  18   17  0.85
  19    3  0.15

ACGTcount: A:0.23, C:0.03, G:0.03, T:0.72


Consensus pattern (18 bp):   
TATTTATTTTATTATTTA
Done.