Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00872.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 733

Length: 1222
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28


Found at i:659 original size:18 final size:18

Alignment explanation


    Indices: 636--681  Score: 56
    Period size: 18  Copynumber: 2.6  Consensus size: 18

        626 ATGAGAGTGG

                           *  
        636 TTCTGATGAGGAAGATGA
          1 TTCTGATGAGGAAGACGA

                     *  *     
        654 TTCTGATGACGATGACGA
          1 TTCTGATGAGGAAGACGA

            *         
        672 GTCTGATGAG
          1 TTCTGATGAG

        682 ATGTCTATGG


Statistics
Matches: 23,  Mismatches: 5, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  18   23  1.00

ACGTcount: A:0.28, C:0.11, G:0.33, T:0.28


Consensus pattern (18 bp):   
TTCTGATGAGGAAGACGA
Done.