Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00875.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4590
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30


Found at i:1371 original size:3 final size:3

Alignment explanation


    Indices: 1365--1392  Score: 56
    Period size: 3  Copynumber: 9.3  Consensus size: 3

       1355 AAGCATGTTG

                                                 
       1365 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T

       1393 AATTTTATGT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68


Consensus pattern (3 bp):   
TTA

Done.