Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01048.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3705
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29


Found at i:3475 original size:12 final size:11

Alignment explanation


    Indices: 3442--3467  Score: 52
    Period size: 11  Copynumber: 2.4  Consensus size: 11

       3432 TCCAAAAGTT

                       
       3442 AAAATGATAAG
          1 AAAATGATAAG

                       
       3453 AAAATGATAAG
          1 AAAATGATAAG

                
       3464 AAAA
          1 AAAA

       3468 AAGATAAGTA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   15  1.00

ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15


Consensus pattern (11 bp):   
AAAATGATAAG
Done.