Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00894.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 691

Length: 1153
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.30


Found at i:928 original size:5 final size:5

Alignment explanation


    Indices: 918--948  Score: 62
    Period size: 5  Copynumber: 6.2  Consensus size: 5

        908 GTTGGGTGTT

                                                 
        918 TTCCC TTCCC TTCCC TTCCC TTCCC TTCCC T
          1 TTCCC TTCCC TTCCC TTCCC TTCCC TTCCC T

        949 GCAAGGCTCC


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   26  1.00

ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42


Consensus pattern (5 bp):   
TTCCC

Found at i:1051 original size:27 final size:27

Alignment explanation


    Indices: 1020--1072  Score: 106
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       1010 TTTGTTGATT

                                       
       1020 TTCTTTTCATTTCCCTTTCGTTTTTAA
          1 TTCTTTTCATTTCCCTTTCGTTTTTAA

                                      
       1047 TTCTTTTCATTTCCCTTTCGTTTTTA
          1 TTCTTTTCATTTCCCTTTCGTTTTTA

       1073 CTTTCTAATA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   26  1.00

ACGTcount: A:0.09, C:0.23, G:0.04, T:0.64


Consensus pattern (27 bp):   
TTCTTTTCATTTCCCTTTCGTTTTTAA
Done.