Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00952.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 632

Length: 1054
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30


Found at i:902 original size:37 final size:37

Alignment explanation


    Indices: 852--927  Score: 134
    Period size: 37  Copynumber: 2.1  Consensus size: 37

        842 ACTAAGAGAG

                            *                    
        852 GATGCTGTTCTACTTAGAAAGGTAATAGGTTACATTT
          1 GATGCTGTTCTACTTAAAAAGGTAATAGGTTACATTT

                                   *             
        889 GATGCTGTTCTACTTAAAAAGGTGATAGGTTACATTT
          1 GATGCTGTTCTACTTAAAAAGGTAATAGGTTACATTT

              
        926 GA
          1 GA

        928 GAAGGTAAAA


Statistics
Matches: 37,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  37   37  1.00

ACGTcount: A:0.30, C:0.11, G:0.22, T:0.37


Consensus pattern (37 bp):   
GATGCTGTTCTACTTAAAAAGGTAATAGGTTACATTT
Done.