isoform.fa.s23902.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Ga05g00954.F2
Parameters: 2 7 7 80 10 50 1000
Length:  4333

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416--579	21	8.3	21	63	18	57	31	46	6	15	1.70
498--730	39	6.1	39	77	6	210	32	45	7	14	1.72
474--741	78	3.5	75	74	9	204	32	45	7	14	1.72
516--729	72	2.8	77	76	9	224	32	45	7	13	1.72
646--829	99	1.9	99	83	0	242	30	48	7	13	1.69
721--904	39	4.6	39	76	6	140	33	46	4	15	1.66
666--790	60	2.1	60	83	5	155	30	48	6	15	1.70
666--1036	21	18.2	21	65	17	104	31	48	5	14	1.66
880--934	27	2.0	27	96	0	101	21	56	1	20	1.51
844--970	66	1.9	66	88	3	193	30	50	3	15	1.60
910--1015	39	2.7	39	91	0	158	33	50	5	11	1.62
948--1621	60	11.1	60	75	11	377	32	47	7	12	1.69
1008--1660	39	16.7	39	68	15	183	32	47	7	13	1.69
910--1102	99	1.9	99	88	0	287	34	48	6	11	1.64
1030--1172	72	2.0	72	87	0	205	32	46	8	11	1.71
910--1237	132	2.4	132	79	9	317	33	47	6	12	1.67
1159--1258	21	4.8	21	73	16	82	36	48	3	13	1.57
1281--1720	21	22.2	21	65	18	104	32	48	6	12	1.68
1158--1452	138	2.1	139	87	4	416	31	46	7	13	1.72
1214--1483	138	2.0	135	84	6	348	31	47	8	13	1.73
1221--1527	138	2.2	139	76	9	322	31	47	7	13	1.71
1539--1618	18	4.3	18	68	14	54	35	51	3	10	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1341--1683	60	5.9	56	81	8	264	32	47	6	12	1.68
948--1693	117	6.4	117	72	13	446	32	47	6	12	1.68
1274--1696	177	2.4	177	78	8	448	32	47	7	13	1.69
1476--1720	60	4.1	60	80	7	211	34	49	4	11	1.59
1654--1760	39	2.7	39	86	0	151	36	48	4	10	1.58
1104--1738	156	4.0	156	74	11	461	32	47	7	12	1.69
1596--1759	21	8.2	21	64	14	87	35	48	4	11	1.59
1656--1781	39	3.2	38	84	2	144	34	48	6	11	1.64
1521--1859	99	3.5	96	78	4	295	33	46	7	12	1.69
1558--1883	138	2.4	138	81	4	358	33	46	7	13	1.70
1693--1943	99	2.5	99	82	4	301	30	45	9	14	1.76
1872--1970	21	4.9	21	74	7	78	29	43	10	17	1.81
1839--2017	60	3.0	60	83	0	214	30	44	8	17	1.78
1953--2043	39	2.3	40	77	7	98	31	40	7	19	1.80

Tables:   1

The End!