Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00962.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3282
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29


Found at i:3017 original size:35 final size:35

Alignment explanation


    Indices: 2971--3041  Score: 142
    Period size: 35  Copynumber: 2.0  Consensus size: 35

       2961 CACGATAACA

                                               
       2971 TCATGTGATAATTTCCTCTCCCAAGCTTTTTGGCT
          1 TCATGTGATAATTTCCTCTCCCAAGCTTTTTGGCT

                                               
       3006 TCATGTGATAATTTCCTCTCCCAAGCTTTTTGGCT
          1 TCATGTGATAATTTCCTCTCCCAAGCTTTTTGGCT

             
       3041 T
          1 T

       3042 TTCTCGTCAA


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  35   36  1.00

ACGTcount: A:0.17, C:0.25, G:0.14, T:0.44


Consensus pattern (35 bp):   
TCATGTGATAATTTCCTCTCCCAAGCTTTTTGGCT
Done.