Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00977.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2694
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28


Found at i:931 original size:66 final size:66

Alignment explanation


    Indices: 783--939  Score: 181
    Period size: 66  Copynumber: 2.4  Consensus size: 66

        773 AAAAGAGCCT

                                      *                  *    *            **
        783 GCAAATGTTTTAGAACGACAAAGGGGGGAGAACGTTGAAGATCAAGCAGCTAAACGGAAAGGGGC
          1 GCAAATGTTTTAGAACGACAAAGGGGAGAGAACGTTGAAGATCAAACAGCAAAACGGAAAGGGAA

             
        848 G
         66 G

                  *    *                    *              *                 
        849 GCAAATCTTTTGGAACGACAAAGGGGAGAGAATGTTGAAGATCAAACGGCAAAAC-GACAAGGGA
          1 GCAAATGTTTTAGAACGACAAAGGGGAGAGAACGTTGAAGATCAAACAGCAAAACGGA-AAGGGA

             *
        913 AT
         65 AG

              **      *              
        915 GCTGATGTTTCAGAACGACAAAGGG
          1 GCAAATGTTTTAGAACGACAAAGGG

        940 AAGACAATCC


Statistics
Matches: 75,  Mismatches: 15, Indels: 2
        0.82            0.16        0.02

Matches are distributed among these distances:
  65    2  0.03
  66   73  0.97

ACGTcount: A:0.39, C:0.14, G:0.32, T:0.15


Consensus pattern (66 bp):   
GCAAATGTTTTAGAACGACAAAGGGGAGAGAACGTTGAAGATCAAACAGCAAAACGGAAAGGGAA
G
Done.