Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00986.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4117
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35


Found at i:3929 original size:122 final size:122

Alignment explanation


    Indices: 3765--4013  Score: 417
    Period size: 122  Copynumber: 2.0  Consensus size: 122

       3755 GGTGTTTTGC

                *      * *                                                   
       3765 TTTTGAATATGTAGAAGGCAGTACTATTGCTAGGTACAGGTAAGTTTCACTACTTCCAGGAACTG
          1 TTTTTAATATGCAAAAGGCAGTACTATTGCTAGGTACAGGTAAGTTTCACTACTTCCAGGAACTG

             *                                             *         
       3830 AGATACCACTATAGTCTAGAGTATCTAATATATGACTAATAATATTTTTGTTAGTTT
         66 AAATACCACTATAGTCTAGAGTATCTAATATATGACTAATAATATTTGTGTTAGTTT

                              *      *                                       
       3887 TTTTTAATATGCAAAAGGTAGTACTGTTGCTAGGTACAGGTAAGTTTCACTACTTCCAGGAACTG
          1 TTTTTAATATGCAAAAGGCAGTACTATTGCTAGGTACAGGTAAGTTTCACTACTTCCAGGAACTG

                      *                           *                  
       3952 AAATACCACTGTAGTCTAGAGTATCTAATATATGACTACTAATATTTGTGTTAGTTT
         66 AAATACCACTATAGTCTAGAGTATCTAATATATGACTAATAATATTTGTGTTAGTTT

                 
       4009 TTTTT
          1 TTTTT

       4014 TTTGTATTTT


Statistics
Matches: 118,  Mismatches: 9, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
 122  118  1.00

ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38


Consensus pattern (122 bp):   
TTTTTAATATGCAAAAGGCAGTACTATTGCTAGGTACAGGTAAGTTTCACTACTTCCAGGAACTG
AAATACCACTATAGTCTAGAGTATCTAATATATGACTAATAATATTTGTGTTAGTTT
Done.