Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01006.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 619

Length: 1033
ACGTcount: A:0.20, C:0.23, G:0.25, T:0.33


Found at i:86 original size:34 final size:34

Alignment explanation


    Indices: 45--115  Score: 142
    Period size: 34  Copynumber: 2.1  Consensus size: 34

         35 TTTTATTTTC

                                              
         45 TTTTTTAGTTTTCAAGCTCTAAGTCCAGCTAGAT
          1 TTTTTTAGTTTTCAAGCTCTAAGTCCAGCTAGAT

                                              
         79 TTTTTTAGTTTTCAAGCTCTAAGTCCAGCTAGAT
          1 TTTTTTAGTTTTCAAGCTCTAAGTCCAGCTAGAT

               
        113 TTT
          1 TTT

        116 CACTTTTCGG


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  34   37  1.00

ACGTcount: A:0.23, C:0.17, G:0.14, T:0.46


Consensus pattern (34 bp):   
TTTTTTAGTTTTCAAGCTCTAAGTCCAGCTAGAT
Done.