Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01008.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4053
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37


Found at i:727 original size:7 final size:7

Alignment explanation


    Indices: 715--746  Score: 57
    Period size: 7  Copynumber: 4.7  Consensus size: 7

        705 AGCCCAAGGC

                   
        715 TTTTTTA
          1 TTTTTTA

                   
        722 TTTTTTA
          1 TTTTTTA

                   
        729 TTTTTTA
          1 TTTTTTA

                   
        736 TTTTTT-
          1 TTTTTTA

                 
        742 TTTTT
          1 TTTTT

        747 ACTATTTCGC


Statistics
Matches: 25,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   6    5  0.20
   7   20  0.80

ACGTcount: A:0.09, C:0.00, G:0.00, T:0.91


Consensus pattern (7 bp):   
TTTTTTA

Done.