Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01058.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1772
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31


Found at i:166 original size:5 final size:5

Alignment explanation


    Indices: 156--186  Score: 53
    Period size: 5  Copynumber: 6.2  Consensus size: 5

        146 TGTTTGGAGT

                                  *              
        156 GAAGA GAAGA GAAGA GAAGG GAAGA GAAGA G
          1 GAAGA GAAGA GAAGA GAAGA GAAGA GAAGA G

        187 CGAGTGTTTT


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   5   24  1.00

ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00


Consensus pattern (5 bp):   
GAAGA

Done.