Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01015.F20

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3903
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36


Found at i:2471 original size:21 final size:21

Alignment explanation


    Indices: 2445--2487  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2435 AAGGTGCACA

                                 
       2445 GATATTCTGTGACGTGGTTCT
          1 GATATTCTGTGACGTGGTTCT

                                 
       2466 GATATTCTGTGACGTGGTTCT
          1 GATATTCTGTGACGTGGTTCT

             
       2487 G
          1 G

       2488 CTTTAATTCT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.14, C:0.14, G:0.30, T:0.42


Consensus pattern (21 bp):   
GATATTCTGTGACGTGGTTCT
Done.