Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00105.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 842

Length: 1404
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.27


Found at i:1290 original size:44 final size:44

Alignment explanation


    Indices: 1236--1346  Score: 197
    Period size: 44  Copynumber: 2.5  Consensus size: 44

       1226 GTTGAAAATG

                                           *         *  
       1236 GAAAA-TGACAAATTCGCATAGTAACCCAAATAATGGGTTGGTA
          1 GAAAATTGACAAATTCGCATAGTAACCCAAACAATGGGTTGATA

                                                        
       1279 GAAAATTGACAAATTCGCATAGTAACCCAAACAATGGGTTGATA
          1 GAAAATTGACAAATTCGCATAGTAACCCAAACAATGGGTTGATA

                                    
       1323 GAAAATTGACAAATTCGCATAGTA
          1 GAAAATTGACAAATTCGCATAGTA

       1347 GCATGACTCT


Statistics
Matches: 65,  Mismatches: 2, Indels: 1
        0.96            0.03        0.01

Matches are distributed among these distances:
  43    5  0.08
  44   60  0.92

ACGTcount: A:0.43, C:0.14, G:0.19, T:0.23


Consensus pattern (44 bp):   
GAAAATTGACAAATTCGCATAGTAACCCAAACAATGGGTTGATA
Done.