Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01021.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3686
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27


Found at i:2529 original size:40 final size:39

Alignment explanation


    Indices: 2474--2552  Score: 149
    Period size: 40  Copynumber: 2.0  Consensus size: 39

       2464 TTTGAAAAGA

                                                    
       2474 AGTTTGAGGTTGGTTATTGTTCTTAGTTCGATATTATATG
          1 AGTTTGAGGTTGGTTATTGTTCTTAG-TCGATATTATATG

                                                   
       2514 AGTTTGAGGTTGGTTATTGTTCTTAGTCGATATTATATG
          1 AGTTTGAGGTTGGTTATTGTTCTTAGTCGATATTATATG

       2553 CATTTTACTA


Statistics
Matches: 39,  Mismatches: 0, Indels: 1
        0.98            0.00        0.03

Matches are distributed among these distances:
  39   13  0.33
  40   26  0.67

ACGTcount: A:0.20, C:0.05, G:0.25, T:0.49


Consensus pattern (39 bp):   
AGTTTGAGGTTGGTTATTGTTCTTAGTCGATATTATATG
Done.