Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01032.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1881
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31


Found at i:428 original size:20 final size:20

Alignment explanation


    Indices: 403--446  Score: 88
    Period size: 20  Copynumber: 2.2  Consensus size: 20

        393 TTCATAGGAA

                                
        403 AAAAATCGATACCTTAATTC
          1 AAAAATCGATACCTTAATTC

                                
        423 AAAAATCGATACCTTAATTC
          1 AAAAATCGATACCTTAATTC

                
        443 AAAA
          1 AAAA

        447 TTTGACTAAG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   24  1.00

ACGTcount: A:0.50, C:0.18, G:0.05, T:0.27


Consensus pattern (20 bp):   
AAAAATCGATACCTTAATTC
Done.