Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01035.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3139
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28


Found at i:3045 original size:4 final size:4

Alignment explanation


    Indices: 3036--3060  Score: 50
    Period size: 4  Copynumber: 6.2  Consensus size: 4

       3026 TCCTATATAC

                                           
       3036 ATGT ATGT ATGT ATGT ATGT ATGT A
          1 ATGT ATGT ATGT ATGT ATGT ATGT A

       3061 GATTGACAGG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   21  1.00

ACGTcount: A:0.28, C:0.00, G:0.24, T:0.48


Consensus pattern (4 bp):   
ATGT

Done.