Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01070.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3302
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32


Found at i:71 original size:9 final size:8

Alignment explanation


    Indices: 55--79  Score: 50
    Period size: 8  Copynumber: 3.1  Consensus size: 8

         45 TACGAATAAC

                    
         55 TCTTTTTT
          1 TCTTTTTT

                    
         63 TCTTTTTT
          1 TCTTTTTT

                    
         71 TCTTTTTT
          1 TCTTTTTT

             
         79 T
          1 T

         80 GCTTAAAGAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   17  1.00

ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88


Consensus pattern (8 bp):   
TCTTTTTT

Found at i:3155 original size:9 final size:9

Alignment explanation


    Indices: 3141--3166  Score: 52
    Period size: 9  Copynumber: 2.9  Consensus size: 9

       3131 TTATGGCATT

                     
       3141 GCTGCTGCC
          1 GCTGCTGCC

                     
       3150 GCTGCTGCC
          1 GCTGCTGCC

                    
       3159 GCTGCTGC
          1 GCTGCTGC

       3167 TTCCACAGAT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.00, C:0.42, G:0.35, T:0.23


Consensus pattern (9 bp):   
GCTGCTGCC
Done.