Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01072.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 979

Length: 1633
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.32


Found at i:1587 original size:16 final size:16

Alignment explanation


    Indices: 1566--1600  Score: 61
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       1556 GGGCCACATT

                          * 
       1566 TTTTTGTACGTTAATA
          1 TTTTTGTACGTTAAGA

                            
       1582 TTTTTGTACGTTAAGA
          1 TTTTTGTACGTTAAGA

               
       1598 TTT
          1 TTT

       1601 CCACAGCTAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  16   18  1.00

ACGTcount: A:0.23, C:0.06, G:0.14, T:0.57


Consensus pattern (16 bp):   
TTTTTGTACGTTAAGA
Done.