Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00106.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 355

Length: 593
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33


Found at i:257 original size:30 final size:30

Alignment explanation


    Indices: 221--424  Score: 185
    Period size: 30  Copynumber: 6.8  Consensus size: 30

        211 CATGGGTTTA

                            *   *     *   
        221 GTTATGGTTATTCACCTAGCAGCGGCGGTG
          1 GTTATGGTTATTCACCCAGCGGCGGCAGTG

                                    *   ***
        251 GTTATGGTTATTCACCCCA-CGGCAGCAACA
          1 GTTATGGTTATTCA-CCCAGCGGCGGCAGTG

                               *   *   * *
        281 GTTATGGTTATTCACCCAGTGGCAGCAATA
          1 GTTATGGTTATTCACCCAGCGGCGGCAGTG

                            *     *  *    
        311 GTTATGGTTATTCACCTAGCGGTGGTAGTG
          1 GTTATGGTTATTCACCCAGCGGCGGCAGTG

                    *             *   *   
        341 GTTATGGTAATTCACCCAGCGGTGGCGGTG
          1 GTTATGGTTATTCACCCAGCGGCGGCAGTG

                    *            *     *   
        371 GTTATGGTAATTCACCCTAGCAGCGGCGGTG
          1 GTTATGGTTATTCACCC-AGCGGCGGCAGTG

                    *         *    
        402 GTTATGGTAATTCACCCAACGGC
          1 GTTATGGTTATTCACCCAGCGGC

        425 AGTTGTAGTA


Statistics
Matches: 147,  Mismatches: 24, Indels: 6
        0.83            0.14        0.03

Matches are distributed among these distances:
  29    4  0.03
  30  112  0.76
  31   31  0.21

ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28


Consensus pattern (30 bp):   
GTTATGGTTATTCACCCAGCGGCGGCAGTG

Done.