Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01079.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5233
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28


Found at i:4091 original size:90 final size:90

Alignment explanation


    Indices: 3990--4594  Score: 933
    Period size: 90  Copynumber: 6.7  Consensus size: 90

       3980 GCTTCTGGTC

                                    *     *                     *          **
       3990 TCCCTTCAACTGGCTCAGCTTCTAGTATGCGAACTGTTTCACCTGCTGTAGTTAATGCACAAATA
          1 TCCCTTCAACTGGCTCAGCTTCTACTATGCAAACTGTTTCACCTGCTGTAGTCAATGCACAAACC

                                     
       4055 TTGCAGCGTTCTACTGCTTCAGGGA
         66 TTGCAGCGTTCTACTGCTTCAGGGA

                                                                            *
       4080 TCCCTTCAACTGGCTCAGCTTCTACTATGCAAACTGTTTCACCTGCTGTAGTCAATGCACAAACA
          1 TCCCTTCAACTGGCTCAGCTTCTACTATGCAAACTGTTTCACCTGCTGTAGTCAATGCACAAACC

                                     
       4145 TTGCAGCGTTCTACTGCTTCAGGGA
         66 TTGCAGCGTTCTACTGCTTCAGGGA

             *                       *                                       
       4170 TTCCTTCAACTGGCTCAGCTTCTACCATGCAAACTGTTTCACCTGCTGTAGTCAATGCACAAACC
          1 TCCCTTCAACTGGCTCAGCTTCTACTATGCAAACTGTTTCACCTGCTGTAGTCAATGCACAAACC

                           *         
       4235 TTGCAGCGTTCTACTACTTCAGGGA
         66 TTGCAGCGTTCTACTGCTTCAGGGA

                                      *                  *                  *
       4260 TCCCTTCAACTGGCTCAGCTTCTACTGTGCAAACTGTTTCACCTGTTGTAGTCAATGCACAAACT
          1 TCCCTTCAACTGGCTCAGCTTCTACTATGCAAACTGTTTCACCTGCTGTAGTCAATGCACAAACC

                           *         
       4325 TTGCAGCGTTCTACTACTTCAGGGA
         66 TTGCAGCGTTCTACTGCTTCAGGGA

                       *     *        *               *     *  *             
       4350 TCCCTTCAACTAGCTCAACTTCTACTGTGCAAACTGTTTCACTTGCTGCAGCCAATGCACAAACC
          1 TCCCTTCAACTGGCTCAGCTTCTACTATGCAAACTGTTTCACCTGCTGTAGTCAATGCACAAACC

                   *   *             
       4415 TTGCAGCCTTCCACTGCTTCAGGGA
         66 TTGCAGCGTTCTACTGCTTCAGGGA

                 *                  *                                        
       4440 TCCCTCCAACTGGCTCAGCTTCTAGTATGCAAACTGTTTCACCTGCTGTAGTCAATGCACAAACC
          1 TCCCTTCAACTGGCTCAGCTTCTACTATGCAAACTGTTTCACCTGCTGTAGTCAATGCACAAACC

                   *   *             
       4505 TTGCAGCCTTCCACTGCTTCAGGGA
         66 TTGCAGCGTTCTACTGCTTCAGGGA

                                *                    *      *          *     
       4530 TCCCTTCAACTGGCTCAGCTACTAGC-ATGCAAACTGTTTCTCCTGCTCTAGTCAATGCGCAAAC
          1 TCCCTTCAACTGGCTCAGCTTCTA-CTATGCAAACTGTTTCACCTGCTGTAGTCAATGCACAAAC

             
       4594 C
         65 C

       4595 ATGGGTCCAC


Statistics
Matches: 477,  Mismatches: 37, Indels: 2
        0.92            0.07        0.00

Matches are distributed among these distances:
  90  477  1.00

ACGTcount: A:0.23, C:0.30, G:0.17, T:0.30


Consensus pattern (90 bp):   
TCCCTTCAACTGGCTCAGCTTCTACTATGCAAACTGTTTCACCTGCTGTAGTCAATGCACAAACC
TTGCAGCGTTCTACTGCTTCAGGGA

Done.