Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01080.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 507

Length: 846
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.24


Found at i:312 original size:42 final size:42

Alignment explanation


    Indices: 259--499  Score: 358
    Period size: 42  Copynumber: 5.7  Consensus size: 42

        249 GCACTAGGTT

                                                      
        259 GTCTAGTAGGAAAGCTAAGGATGATGGAGATGGTACTAGATC
          1 GTCTAGTAGGAAAGCTAAGGATGATGGAGATGGTACTAGATC

                                     *          *      
        301 GTCT-GATAGGAAAGCTAAGGATGACGGAGATGGTATTAGATC
          1 GTCTAG-TAGGAAAGCTAAGGATGATGGAGATGGTACTAGATC

             *              *            *      *     
        343 GCCTAGTAGGAAAGCTGAGGATGATGGAGGTGGTACCAGATC
          1 GTCTAGTAGGAAAGCTAAGGATGATGGAGATGGTACTAGATC

            *                  *                *     
        385 CTCTAGTAGGAAAGCTAAGAATGATGGAGATGGTACCAGATC
          1 GTCTAGTAGGAAAGCTAAGGATGATGGAGATGGTACTAGATC

            *           *                             
        427 ATCTAGTAGGAAGGCTAAGGATGATGGAGATGGTACTAGATC
          1 GTCTAGTAGGAAAGCTAAGGATGATGGAGATGGTACTAGATC

            *                              
        469 TTCTAGTAGGAAAGCTAAGGATGATGGAGAT
          1 GTCTAGTAGGAAAGCTAAGGATGATGGAGAT

        500 AATGATTTAA


Statistics
Matches: 178,  Mismatches: 19, Indels: 4
        0.89            0.09        0.02

Matches are distributed among these distances:
  41    1  0.01
  42  176  0.99
  43    1  0.01

ACGTcount: A:0.33, C:0.11, G:0.33, T:0.23


Consensus pattern (42 bp):   
GTCTAGTAGGAAAGCTAAGGATGATGGAGATGGTACTAGATC

Done.