Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01090.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 718

Length: 1198
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.28


Found at i:1024 original size:42 final size:42

Alignment explanation


    Indices: 977--1059  Score: 139
    Period size: 42  Copynumber: 2.0  Consensus size: 42

        967 GTGGAAATCA

                                    **                
        977 GAGGCCCGAATGTAAGAAGAAATAGTGACGGGAGGGGGAAGT
          1 GAGGCCCGAATGTAAGAAGAAATAACGACGGGAGGGGGAAGT

                  *                                  
       1019 GAGGCCTGAATGTAAGAAGAAATAACGACGGGAGGGGGAAG
          1 GAGGCCCGAATGTAAGAAGAAATAACGACGGGAGGGGGAAG

       1060 GAAAAAAATA


Statistics
Matches: 38,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  42   38  1.00

ACGTcount: A:0.37, C:0.10, G:0.42, T:0.11


Consensus pattern (42 bp):   
GAGGCCCGAATGTAAGAAGAAATAACGACGGGAGGGGGAAGT
Done.