Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01131.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1844
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30


Found at i:1614 original size:12 final size:12

Alignment explanation


    Indices: 1597--1626  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

       1587 TCTACTCATC

                        
       1597 AGTGACTCCCTT
          1 AGTGACTCCCTT

                        
       1609 AGTGACTCCCTT
          1 AGTGACTCCCTT

            *     
       1621 TGTGAC
          1 AGTGAC

       1627 CATGGTGGCA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.17, C:0.30, G:0.20, T:0.33


Consensus pattern (12 bp):   
AGTGACTCCCTT
Done.