Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01135.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2024
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27


Found at i:1865 original size:18 final size:18

Alignment explanation


    Indices: 1842--1877  Score: 63
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       1832 TATATTGCAT

                              
       1842 GCAACTATGTATTAGGAA
          1 GCAACTATGTATTAGGAA

                      *       
       1860 GCAACTATGTTTTAGGAA
          1 GCAACTATGTATTAGGAA

       1878 ACTACTAAGT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.36, C:0.11, G:0.22, T:0.31


Consensus pattern (18 bp):   
GCAACTATGTATTAGGAA

Found at i:1884 original size:18 final size:18

Alignment explanation


    Indices: 1843--1884  Score: 57
    Period size: 18  Copynumber: 2.3  Consensus size: 18

       1833 ATATTGCATG

                             *
       1843 CAACTATGTATTAGGAAG
          1 CAACTATGTATTAGGAAA

                     *        
       1861 CAACTATGTTTTAGGAAA
          1 CAACTATGTATTAGGAAA

             *    
       1879 CTACTA
          1 CAACTA

       1885 AGTCCAGGCT


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31


Consensus pattern (18 bp):   
CAACTATGTATTAGGAAA
Done.