Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01142.F25

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4043
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.32


Found at i:3660 original size:19 final size:19

Alignment explanation


    Indices: 3636--3673  Score: 58
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       3626 ATATTCATAC

                   *           
       3636 GGTTCATGATTAAGAAAAT
          1 GGTTCATAATTAAGAAAAT

                       *       
       3655 GGTTCATAATTGAGAAAAT
          1 GGTTCATAATTAAGAAAAT

       3674 TATGCATTTG


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  19   17  1.00

ACGTcount: A:0.42, C:0.05, G:0.21, T:0.32


Consensus pattern (19 bp):   
GGTTCATAATTAAGAAAAT
Done.