Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga05g01144.F3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4315
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Found at i:3037 original size:143 final size:144
Alignment explanation
Indices: 2772--3061 Score: 528
Period size: 143 Copynumber: 2.0 Consensus size: 144
2762 CTGCATATAC
2772 ATAGTAGCATATTTCTTGCTTTTACTGAGACCTTATAACTCATGAATTTTGTTTTTCTAAAAGAA
1 ATAGTAGCATATTTCTTGCTTTTACTGAGACCTTATAACTCATGAATTTTG-TTTTCTAAAAGAA
*
2837 AGGCACCTTTCTGTTAAACAGAGTTAGTAGTCTGAATGGTATTGATTGTTTCACATTTTCTTTTG
65 AGGAACCTTTCTGTTAAACAGAGTTAGTAGTCTGAATGGTATTGATTGTTTCACATTTTCTTTTG
2902 AAAGATGAAATGTCT
130 AAAGATGAAATGTCT
* *
2917 ATAGTAGCATATTTCTTGCTTTTACTGAGACCTTTTAACTCATGAATTTTG-TTTGTAAAAGAAA
1 ATAGTAGCATATTTCTTGCTTTTACTGAGACCTTATAACTCATGAATTTTGTTTTCTAAAAGAAA
*
2981 GGAACCTTTCTGTTAAACAGAGTTAGTAGTCTGAATGGTATTGATTGTTTCTCATTTTCTTTTGA
66 GGAACCTTTCTGTTAAACAGAGTTAGTAGTCTGAATGGTATTGATTGTTTCACATTTTCTTTTGA
3046 AAGATGAAATGTCT
131 AAGATGAAATGTCT
3060 AT
1 AT
3062 GGTGCAGGGG
Statistics
Matches: 141, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
143 91 0.65
145 50 0.35
ACGTcount: A:0.29, C:0.12, G:0.17, T:0.42
Consensus pattern (144 bp):
ATAGTAGCATATTTCTTGCTTTTACTGAGACCTTATAACTCATGAATTTTGTTTTCTAAAAGAAA
GGAACCTTTCTGTTAAACAGAGTTAGTAGTCTGAATGGTATTGATTGTTTCACATTTTCTTTTGA
AAGATGAAATGTCT
Done.