Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01147.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4281
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34


Found at i:875 original size:21 final size:21

Alignment explanation


    Indices: 849--890  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        839 ACTTTACTTA

                                 
        849 TGGGTAATATGATTGTAACTC
          1 TGGGTAATATGATTGTAACTC

                                 
        870 TGGGTAATATGATTGTAACTC
          1 TGGGTAATATGATTGTAACTC

        891 AAGTTGGAAT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.29, C:0.10, G:0.24, T:0.38


Consensus pattern (21 bp):   
TGGGTAATATGATTGTAACTC

Found at i:997 original size:55 final size:57

Alignment explanation


    Indices: 870--1015  Score: 260
    Period size: 55  Copynumber: 2.6  Consensus size: 57

        860 ATTGTAACTC

                                                                     
        870 TGGGTAATATGATTGTAACTCAAGTTGGAATGTTATCCTTCTCTAGAACTTTACTTA
          1 TGGGTAATATGATTGTAACTCAAGTTGGAATGTTATCCTTCTCTAGAACTTTACTTA

                                  *                              *   
        927 TGGGTAATATGATTGTAACTCACGTTGGAATGTTATCC-TCT-TAGAACTTTATTTA
          1 TGGGTAATATGATTGTAACTCAAGTTGGAATGTTATCCTTCTCTAGAACTTTACTTA

                                              
        982 TGGGTAATATGATTGTAACTCAAGTTGGAATGTT
          1 TGGGTAATATGATTGTAACTCAAGTTGGAATGTT

       1016 GTCAGCCAGT


Statistics
Matches: 86,  Mismatches: 3, Indels: 2
        0.95            0.03        0.02

Matches are distributed among these distances:
  55   46  0.53
  56    3  0.03
  57   37  0.43

ACGTcount: A:0.28, C:0.12, G:0.20, T:0.40


Consensus pattern (57 bp):   
TGGGTAATATGATTGTAACTCAAGTTGGAATGTTATCCTTCTCTAGAACTTTACTTA
Done.