Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01152.C4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2944
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.35


Found at i:308 original size:17 final size:17

Alignment explanation


    Indices: 268--309  Score: 68
    Period size: 16  Copynumber: 2.5  Consensus size: 17

        258 CATACGATGA

                  *          
        268 TTGTTTTTTTCTATTTT
          1 TTGTTTATTTCTATTTT

                             
        285 TTG-TTATTTCTATTTT
          1 TTGTTTATTTCTATTTT

                     
        301 TTGTTTATT
          1 TTGTTTATT

        310 GTATCTTAGA


Statistics
Matches: 23,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  16   15  0.65
  17    8  0.35

ACGTcount: A:0.10, C:0.05, G:0.07, T:0.79


Consensus pattern (17 bp):   
TTGTTTATTTCTATTTT
Done.