Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01158.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2587
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28


Found at i:21 original size:11 final size:11

Alignment explanation


    Indices: 5--29  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

          1 AAGG

                       
          5 AAAAGAAAAGA
          1 AAAAGAAAAGA

                       
         16 AAAAGAAAAGA
          1 AAAAGAAAAGA

               
         27 AAA
          1 AAA

         30 CAGGATACAC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00


Consensus pattern (11 bp):   
AAAAGAAAAGA
Done.