Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01074.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2246
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29


Found at i:100 original size:2 final size:2

Alignment explanation


    Indices: 95--182  Score: 167
    Period size: 2  Copynumber: 44.0  Consensus size: 2

         85 CTCTCTCTCT

                                                                          
         95 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
          1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA

                                                                        * 
        137 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA TA
          1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA

                 
        179 CA CA
          1 CA CA

        183 TATTCGTTAG


Statistics
Matches: 84,  Mismatches: 2, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
   2   84  1.00

ACGTcount: A:0.50, C:0.49, G:0.00, T:0.01


Consensus pattern (2 bp):   
CA

Done.