Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01169.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3986
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27


Found at i:709 original size:33 final size:33

Alignment explanation


    Indices: 655--719  Score: 78
    Period size: 33  Copynumber: 2.0  Consensus size: 33

        645 AGTAGAGGGT

                    *                  *     
        655 AGGGATAGGGACAGAGGCAGAGACAGATATAGG
          1 AGGGATAGCGACAGAGGCAGAGACAGAGATAGG

                       *            *        
        688 AGGGATAGCGATAG-GGTCAGAGAGAGAGATAG
          1 AGGGATAGCGACAGAGG-CAGAGACAGAGATAG

        720 AGATAAAGAT


Statistics
Matches: 27,  Mismatches: 4, Indels: 2
        0.82            0.12        0.06

Matches are distributed among these distances:
  32    2  0.07
  33   25  0.93

ACGTcount: A:0.38, C:0.08, G:0.43, T:0.11


Consensus pattern (33 bp):   
AGGGATAGCGACAGAGGCAGAGACAGAGATAGG
Done.