Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01174.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3395
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35


Found at i:31 original size:2 final size:2

Alignment explanation


    Indices: 26--58  Score: 66
    Period size: 2  Copynumber: 16.5  Consensus size: 2

         16 CACACACAAA

                                                             
         26 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C

         59 ATCATTCATT


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48


Consensus pattern (2 bp):   
CT

Found at i:1279 original size:11 final size:11

Alignment explanation


    Indices: 1263--1287  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

       1253 CTTTCCTGCT

                       
       1263 TTTTTTTTTTC
          1 TTTTTTTTTTC

                       
       1274 TTTTTTTTTTC
          1 TTTTTTTTTTC

               
       1285 TTT
          1 TTT

       1288 CATGTTTTTA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92


Consensus pattern (11 bp):   
TTTTTTTTTTC
Done.