Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01178.F12

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5318
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:2984 original size:50 final size:50

Alignment explanation


    Indices: 2925--3046  Score: 219
    Period size: 50  Copynumber: 2.5  Consensus size: 50

       2915 CGGATAATTA

                        * *                                   
       2925 GAAT-CCAAAATAACCTGAATGTTGAAAGGACCTGAACCTGAAACAACTT
          1 GAATCCCAAAATGATCTGAATGTTGAAAGGACCTGAACCTGAAACAACTT

                                                              
       2974 GAATCCCAAAATGATCTGAATGTTGAAAGGACCTGAACCTGAAACAACTT
          1 GAATCCCAAAATGATCTGAATGTTGAAAGGACCTGAACCTGAAACAACTT

                                   
       3024 GAATCCCAAAATGATCTGAATGT
          1 GAATCCCAAAATGATCTGAATGT

       3047 AAATATGTGC


Statistics
Matches: 70,  Mismatches: 2, Indels: 1
        0.96            0.03        0.01

Matches are distributed among these distances:
  49    4  0.06
  50   66  0.94

ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22


Consensus pattern (50 bp):   
GAATCCCAAAATGATCTGAATGTTGAAAGGACCTGAACCTGAAACAACTT
Done.