Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01196.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2385
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30


Found at i:2278 original size:27 final size:27

Alignment explanation


    Indices: 2240--2294  Score: 110
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       2230 TTTGGATAAG

                                       
       2240 AAAGAATTTCAGTGCTGAAGAAGCGCC
          1 AAAGAATTTCAGTGCTGAAGAAGCGCC

                                       
       2267 AAAGAATTTCAGTGCTGAAGAAGCGCC
          1 AAAGAATTTCAGTGCTGAAGAAGCGCC

             
       2294 A
          1 A

       2295 TCATTCTTTT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.38, C:0.18, G:0.25, T:0.18


Consensus pattern (27 bp):   
AAAGAATTTCAGTGCTGAAGAAGCGCC
Done.