Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01083.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 304

Length: 508
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33


Found at i:437 original size:21 final size:21

Alignment explanation


    Indices: 411--452  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        401 TGAGATGAAA

                                 
        411 TATGAAACTCCATTTCAACAT
          1 TATGAAACTCCATTTCAACAT

                                 
        432 TATGAAACTCCATTTCAACAT
          1 TATGAAACTCCATTTCAACAT

        453 GATTGTTTTT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.38, C:0.24, G:0.05, T:0.33


Consensus pattern (21 bp):   
TATGAAACTCCATTTCAACAT
Done.