Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00108.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3150
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32


Found at i:2122 original size:66 final size:69

Alignment explanation


    Indices: 1990--2127  Score: 194
    Period size: 66  Copynumber: 2.0  Consensus size: 69

       1980 TCTGTTCTCG

                          *                     **   *                       
       1990 TGATTGTTCAAAGGTTGTGCATTACTCCTCTTAATCTGAACGGAGGGATTGCAGGGAGGCATTGT
          1 TGATTGTTCAAAGGCTGTGCATTACTCCTCTTAATCCAAACAGAGGGATTGCAGGGAGGCATTGT

                
       2055 AAAC
         66 AAAC

                                                                             
       2059 TGATTGTTCAAAGGCTGTGCATTACT-C-C-TAATCCAAACAGAGGGATTGC-GAGGAGGCATTG
          1 TGATTGTTCAAAGGCTGTGCATTACTCCTCTTAATCCAAACAGAGGGATTGCAG-GGAGGCATTG

               * 
       2120 TAACC
         65 TAAAC

               
       2125 TGA
          1 TGA

       2128 AGTTGCATTT


Statistics
Matches: 63,  Mismatches: 5, Indels: 5
        0.86            0.07        0.07

Matches are distributed among these distances:
  65    1  0.02
  66   35  0.56
  67    1  0.02
  68    1  0.02
  69   25  0.40

ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28


Consensus pattern (69 bp):   
TGATTGTTCAAAGGCTGTGCATTACTCCTCTTAATCCAAACAGAGGGATTGCAGGGAGGCATTGT
AAAC
Done.